Contents
Release 2005, March 2005
1. Introduction
- Hardware and installation
- Invoking Binding_Site
- Pilot tutorials
2. Theory
- EvolutionaryTrace
- Multiple sequence alignment and sequence dendrogram
- Identifying trace residues
- Clustering residues
- ActiveSite_Search
3. Methodology
- EvolutionaryTrace
- Exposed trace residues
- Trace residues of specified B factors
- ActiveSite_Search
4. Command Summary
- Sequences pulldown
- ActiveSite_Search pulldown
- EvolutionaryTrace pulldown
- Sequence Dendrogram
- Residue Dendrogram
- StrDB pulldown
- Prostat pulldown
A. References
Last updated November 22, 2003
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