public class SequenceComparator extends MotifComparator
Constructor and Description |
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SequenceComparator() |
Modifier and Type | Method and Description |
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int |
compare(Motif m1,
Motif m2)
Compares m1 to m2.
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private java.lang.String |
getAlphabeticallyFirstSequence(Motif m)
Returns a motif's sequence if it doesn't use rev comp, or the alphabetically first of the motif's sequence and rev comp sequence if it
does use it.
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equals
public int compare(Motif m1, Motif m2)
MotifComparator
compare
in interface java.util.Comparator<Motif>
compare
in class MotifComparator
private java.lang.String getAlphabeticallyFirstSequence(Motif m)