public class AssessmentDriver extends BeamDriver
Modifier and Type | Field and Description |
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private static double |
MIN_SCORE |
AMBIGUIZER_NAME, BEAM_NAME, BIPARTITE_NAME, bpScorer, error, fileRoot, knownMotifs, MERGED_NAME, properties, scorer, scorerInfoMap, subtestID, testID, verboseSave
Constructor and Description |
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AssessmentDriver(java.lang.String threadID,
UberProperties properties)
Sets the file root, test ID, thread ID, properties, and scorer.
|
AssessmentDriver(java.lang.String threadID,
UberProperties properties,
int[] group)
Sets the file root, test ID, thread ID, properties, and scorer; uses the specified group instead of pulling the group ID from the
properties.
|
Modifier and Type | Method and Description |
---|---|
Motif[] |
runBeamPlus()
Mirrors BeamDriver's runBeamPlus method, then reads in known motifs and evaluates how each run did.
|
getScorer, printBestMotif, refineBipartite, run, runAmbiguizerEtc, runBeamEtc, runBipartitesEtc, runFilterEtc, runMergeEtc, saveFilterResults, saveProperties, saveResults, saveSpecialStats, setFastaMotifFinder, setMostParams, setVerboseSave
activeCount, checkAccess, clone, countStackFrames, currentThread, destroy, dumpStack, enumerate, getAllStackTraces, getContextClassLoader, getDefaultUncaughtExceptionHandler, getId, getName, getPriority, getStackTrace, getState, getThreadGroup, getUncaughtExceptionHandler, holdsLock, interrupt, interrupted, isAlive, isDaemon, isInterrupted, join, join, join, resume, setContextClassLoader, setDaemon, setDefaultUncaughtExceptionHandler, setName, setPriority, setUncaughtExceptionHandler, sleep, sleep, start, stop, stop, suspend, toString, yield
private static final double MIN_SCORE
public AssessmentDriver(java.lang.String threadID, UberProperties properties) throws UnknownGeneException
UnknownGeneException
public AssessmentDriver(java.lang.String threadID, UberProperties properties, int[] group)
public Motif[] runBeamPlus() throws java.io.IOException
runBeamPlus
in class BeamDriver
java.io.IOException