public class OverlapComparator extends SequenceComparator
Motif.equivalentTo(Motif, double)
, and is at least as long as
minOverlap*(the average length of the two motifs)
. The compare method is identical to that of SequenceComparator. That is,
comparisons are based on alphabetical order of sequences. No equivalence is taken into account.Modifier and Type | Field and Description |
---|---|
static double |
MIN_OVERLAP |
private double |
minOverlap |
Constructor and Description |
---|
OverlapComparator() |
OverlapComparator(double minOverlap) |
Modifier and Type | Method and Description |
---|---|
boolean |
equals(Motif m1,
Motif m2)
Returns compare(m1, m2) == 0.
|
compare
public static final double MIN_OVERLAP
private final double minOverlap
public OverlapComparator()
public OverlapComparator(double minOverlap)
public boolean equals(Motif m1, Motif m2)
MotifComparator
equals
in class MotifComparator