public class CGIScope
extends java.lang.Object
Modifier and Type | Field and Description |
---|---|
private static UberProperties |
clHash |
private static int |
DBRESULT_INVALIDFASTA |
private static int |
DBRESULT_MISSINGGENES |
private static int |
DBRESULT_SUCCESS |
private static int |
DBRESULT_UNSPECIFIEDERROR |
static Stopwatch |
globalTimer |
private static java.util.regex.Pattern |
jobIDRegEx |
private static java.lang.StringBuffer |
overriddenParameters |
static UberProperties |
properties |
static java.util.Properties |
scopeProperties |
Constructor and Description |
---|
CGIScope() |
Modifier and Type | Method and Description |
---|---|
static java.lang.String |
getStackTrace(java.lang.Throwable aThrowable) |
static void |
main(java.lang.String[] args) |
private static void |
overrideDefaultParams(java.lang.String overrideParamFileName) |
static void |
parseCommands(java.lang.String[] args) |
static void |
postMail(java.lang.String recipient,
java.lang.String subject,
java.lang.String message,
java.lang.String from,
java.util.List<java.io.File> attachments,
java.util.List<java.lang.String> attachNames) |
private static void |
printHelp() |
private static void |
storeSpeciesAndSearchType() |
private static void |
updateLogDatabase(int resultCode,
java.lang.String jobId) |
private static java.util.regex.Pattern jobIDRegEx
private static UberProperties clHash
private static final int DBRESULT_INVALIDFASTA
private static final int DBRESULT_MISSINGGENES
private static final int DBRESULT_SUCCESS
private static final int DBRESULT_UNSPECIFIEDERROR
public static Stopwatch globalTimer
public static UberProperties properties
public static java.util.Properties scopeProperties
private static java.lang.StringBuffer overriddenParameters
public static java.lang.String getStackTrace(java.lang.Throwable aThrowable)
public static void main(java.lang.String[] args)
private static void overrideDefaultParams(java.lang.String overrideParamFileName)
public static void parseCommands(java.lang.String[] args)
public static void postMail(java.lang.String recipient, java.lang.String subject, java.lang.String message, java.lang.String from, java.util.List<java.io.File> attachments, java.util.List<java.lang.String> attachNames) throws javax.mail.MessagingException
javax.mail.MessagingException
private static void printHelp()
private static void storeSpeciesAndSearchType()
private static void updateLogDatabase(int resultCode, java.lang.String jobId)