public class MLDriver extends BeamDriver
Modifier and Type | Field and Description |
---|---|
static boolean |
DISCARD_OVERLAPS |
static int |
RAND_KNOWN_RATIO |
static boolean |
USE_REV_COMP |
AMBIGUIZER_NAME, BEAM_NAME, BIPARTITE_NAME, bpScorer, error, fileRoot, knownMotifs, MERGED_NAME, properties, scorer, scorerInfoMap, subtestID, testID, verboseSave
Constructor and Description |
---|
MLDriver(java.lang.String threadID,
UberProperties properties)
Sets the file root, test ID, thread ID, properties, and scorer.
|
MLDriver(java.lang.String threadID,
UberProperties properties,
int[] group)
Sets the file root, test ID, thread ID, properties, and scorer; uses the specified group instead of pulling the group ID from the
properties.
|
Modifier and Type | Method and Description |
---|---|
void |
run()
Calls
BeamDriver.runBeamPlus() . |
getScorer, printBestMotif, refineBipartite, runAmbiguizerEtc, runBeamEtc, runBeamPlus, runBipartitesEtc, runFilterEtc, runMergeEtc, saveFilterResults, saveProperties, saveResults, saveSpecialStats, setFastaMotifFinder, setMostParams, setVerboseSave
activeCount, checkAccess, clone, countStackFrames, currentThread, destroy, dumpStack, enumerate, getAllStackTraces, getContextClassLoader, getDefaultUncaughtExceptionHandler, getId, getName, getPriority, getStackTrace, getState, getThreadGroup, getUncaughtExceptionHandler, holdsLock, interrupt, interrupted, isAlive, isDaemon, isInterrupted, join, join, join, resume, setContextClassLoader, setDaemon, setDefaultUncaughtExceptionHandler, setName, setPriority, setUncaughtExceptionHandler, sleep, sleep, start, stop, stop, suspend, toString, yield
public static final boolean DISCARD_OVERLAPS
public static final int RAND_KNOWN_RATIO
public static final boolean USE_REV_COMP
public MLDriver(java.lang.String threadID, UberProperties properties) throws UnknownGeneException
UnknownGeneException
public MLDriver(java.lang.String threadID, UberProperties properties, int[] group)
public void run()
BeamDriver
BeamDriver.runBeamPlus()
.run
in interface java.lang.Runnable
run
in class BeamDriver