See: Description
Class | Description |
---|---|
FileReaders |
Contains static methods for reading motifs from file, converting gene names to integer IDs, and reading motifs and genes from files by
matching a given key.
|
FileReaders.NameAndID | |
FileWriters |
Contains static methods that for creating buffered files and printing arrays and other objects to file.
|
OrganismLoader |
Command-line program for loading new organisms into SCOPE.
|
OrganismLoader.FastaRecord | |
Scanner |
A simple text scanner which can parse primitive types and strings using regular expressions.
|
SynonymChecker | |
SynonymLoader |
Exception | Description |
---|---|
IllegalFastaFileException |
An exception used to notify a caller that what was expected to be in Fasta format was not.
|
UnknownGeneException |
An exception used to notify a caller that a gene name couldn't be found.
|