private class CGIDriver.MotifGeneListSummary
extends java.lang.Object
Modifier and Type | Field and Description |
---|---|
private int |
genesWithoutMotif |
private java.util.SortedSet<CGIDriver.MotifGeneSummary> |
goodGenes |
private GroupScorer |
groupScorer |
(package private) boolean |
madeGoodGeneBayesDeltaSig |
private int |
modifiedMFWithBlank_count |
private double |
modifiedMFWithBlank_score |
private Motif |
motif |
private java.util.SortedSet<CGIDriver.MotifGeneSummary> |
okayGenes |
private boolean |
output |
Constructor and Description |
---|
CGIDriver.MotifGeneListSummary(Motif pMotif,
MotifFinder modifiedGroupMFWithBlank,
GroupScorer pGroupScorer) |
Modifier and Type | Method and Description |
---|---|
boolean |
evaluateGene(java.lang.Integer geneID,
MotifFinder modifiedGroupMFWithGene) |
int |
getGenesWithoutMotifCount() |
java.util.SortedSet<CGIDriver.MotifGeneSummary> |
getGoodGenes() |
int |
getGoodGenesCount() |
private double |
getGoodGenesDeltaSigMedian() |
Motif |
getMotif() |
java.util.SortedSet<CGIDriver.MotifGeneSummary> |
getOkayGenes() |
int |
getOkayGenesCount() |
private int genesWithoutMotif
private final java.util.SortedSet<CGIDriver.MotifGeneSummary> goodGenes
private final GroupScorer groupScorer
private final int modifiedMFWithBlank_count
private final double modifiedMFWithBlank_score
private final Motif motif
private final java.util.SortedSet<CGIDriver.MotifGeneSummary> okayGenes
private final boolean output
boolean madeGoodGeneBayesDeltaSig
public CGIDriver.MotifGeneListSummary(Motif pMotif, MotifFinder modifiedGroupMFWithBlank, GroupScorer pGroupScorer)
public boolean evaluateGene(java.lang.Integer geneID, MotifFinder modifiedGroupMFWithGene)
public int getGenesWithoutMotifCount()
public java.util.SortedSet<CGIDriver.MotifGeneSummary> getGoodGenes()
public int getGoodGenesCount()
private double getGoodGenesDeltaSigMedian()
public Motif getMotif()
public java.util.SortedSet<CGIDriver.MotifGeneSummary> getOkayGenes()
public int getOkayGenesCount()