public class BayesDeltaSig
extends java.lang.Object
Modifier and Type | Field and Description |
---|---|
double |
deltaSig |
double |
deltaSigMedianRatio |
private double[][] |
deltaSigMedProb |
private double[][] |
deltaSigProb |
double |
genesRatio |
private double[][] |
genesRatioProb |
private double[][] |
motifMatchesProb |
private double[][] |
motifOccurProb |
double |
motifOccurrences |
double |
motifSig |
private double[][] |
motifSigProb |
double |
motifSpecificity |
Constructor and Description |
---|
BayesDeltaSig(Motif pMotif,
double pNumMotifHitsInGene,
double pDeltaSig,
double pDeltaSigMedianOfGenesWithPositiveDeltaSig,
int goodGenesCount,
int okayGenesCount,
int genesWithoutMotifCount) |
Modifier and Type | Method and Description |
---|---|
private static double |
calcMotifSpecificity(Motif motif) |
double |
calcProb() |
int[] |
partition() |
java.lang.String |
toString() |
public double motifSig
public double motifSpecificity
public double motifOccurrences
public double deltaSig
public double deltaSigMedianRatio
public double genesRatio
private final double[][] motifSigProb
private final double[][] motifMatchesProb
private final double[][] motifOccurProb
private final double[][] deltaSigProb
private final double[][] deltaSigMedProb
private final double[][] genesRatioProb
public BayesDeltaSig(Motif pMotif, double pNumMotifHitsInGene, double pDeltaSig, double pDeltaSigMedianOfGenesWithPositiveDeltaSig, int goodGenesCount, int okayGenesCount, int genesWithoutMotifCount)
private static double calcMotifSpecificity(Motif motif)
public double calcProb()
public int[] partition()
public java.lang.String toString()
toString
in class java.lang.Object