public class GffToSql
extends java.lang.Object
Modifier and Type | Field and Description |
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private argparser.StringHolder |
argsFile |
private java.util.SortedMap<java.lang.String,nix.util.bio.parsers.gff.GFF3Feature> |
chromosomes |
private java.util.SortedMap<java.lang.String,java.lang.String> |
chromosomeSequences |
private argparser.StringHolder |
dbUrl |
private argparser.BooleanHolder |
debug |
private static java.util.regex.Pattern |
endOfStringNumber |
private argparser.StringHolder |
fileName |
private java.util.SortedMap<java.lang.String,nix.util.bio.parsers.gff.GFF3Feature> |
genes |
private argparser.StringHolder |
genomeComment |
private argparser.StringHolder |
genomeDate |
private argparser.StringHolder |
genus |
private argparser.StringHolder |
password |
private argparser.StringHolder |
species |
private argparser.StringHolder |
strain |
private argparser.StringHolder |
userName |
Constructor and Description |
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GffToSql(java.lang.String[] args)
Creates a new instance of GffToSql
|
private static final java.util.regex.Pattern endOfStringNumber
private final argparser.StringHolder argsFile
private final java.util.SortedMap<java.lang.String,nix.util.bio.parsers.gff.GFF3Feature> chromosomes
private final java.util.SortedMap<java.lang.String,java.lang.String> chromosomeSequences
private final argparser.StringHolder dbUrl
private final argparser.BooleanHolder debug
private final argparser.StringHolder fileName
private final java.util.SortedMap<java.lang.String,nix.util.bio.parsers.gff.GFF3Feature> genes
private final argparser.StringHolder genomeComment
private final argparser.StringHolder genomeDate
private final argparser.StringHolder genus
private final argparser.StringHolder password
private final argparser.StringHolder species
private final argparser.StringHolder strain
private final argparser.StringHolder userName