public class ScoreKnownsDriver extends BeamDriver
AMBIGUIZER_NAME, BEAM_NAME, BIPARTITE_NAME, bpScorer, error, fileRoot, knownMotifs, MERGED_NAME, properties, scorer, scorerInfoMap, subtestID, testID, verboseSave
Constructor and Description |
---|
ScoreKnownsDriver(java.lang.String threadID,
UberProperties properties)
Sets the file root, test ID, thread ID, properties, and scorer.
|
ScoreKnownsDriver(java.lang.String threadID,
UberProperties properties,
int[] group)
Sets the file root, test ID, thread ID, properties, and scorer; uses the specified group instead of pulling the group ID from the
properties.
|
Modifier and Type | Method and Description |
---|---|
void |
run()
Calls
BeamDriver.runBeamPlus() . |
getScorer, printBestMotif, refineBipartite, runAmbiguizerEtc, runBeamEtc, runBeamPlus, runBipartitesEtc, runFilterEtc, runMergeEtc, saveFilterResults, saveProperties, saveResults, saveSpecialStats, setFastaMotifFinder, setMostParams, setVerboseSave
activeCount, checkAccess, clone, countStackFrames, currentThread, destroy, dumpStack, enumerate, getAllStackTraces, getContextClassLoader, getDefaultUncaughtExceptionHandler, getId, getName, getPriority, getStackTrace, getState, getThreadGroup, getUncaughtExceptionHandler, holdsLock, interrupt, interrupted, isAlive, isDaemon, isInterrupted, join, join, join, resume, setContextClassLoader, setDaemon, setDefaultUncaughtExceptionHandler, setName, setPriority, setUncaughtExceptionHandler, sleep, sleep, start, stop, stop, suspend, toString, yield
public ScoreKnownsDriver(java.lang.String threadID, UberProperties properties) throws UnknownGeneException
UnknownGeneException
public ScoreKnownsDriver(java.lang.String threadID, UberProperties properties, int[] group)
public void run()
BeamDriver
BeamDriver.runBeamPlus()
.run
in interface java.lang.Runnable
run
in class BeamDriver