public class OrganismLoader
extends java.lang.Object
Each FASTA input file should be named <organism>.txt
(where <organism>
is replaced with the name of
the organism), and should be located in scope/FASTA/genomes/
. The organism names should be listed as the command-line
parameters. Use "all" as the first parameter if you want to do all the files in scope/FASTA/genomes/
.
Modifier and Type | Class and Description |
---|---|
private static class |
OrganismLoader.FastaRecord |
Modifier and Type | Field and Description |
---|---|
private static java.util.regex.Pattern |
fixedGeneLengthGrabber |
private static java.lang.String[] |
rnaKeyWords |
private static java.util.regex.Pattern |
UPSTREAMLabel |
Constructor and Description |
---|
OrganismLoader() |
Modifier and Type | Method and Description |
---|---|
static void |
main(java.lang.String[] args) |